STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0686RNA-binding S4 domain protein; COGs: COG2501 conserved hypothetical protein; InterPro IPR002942; KEGG: xce:Xcel_1301 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SPTR: D0WQU2 RNA-binding S4; PFAM: S4 domain. (75 aa)    
Predicted Functional Partners:
Arch_0688
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: bcv:Bcav_1772 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C5C4Q0 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
  
    0.806
Arch_0687
COGs: COG0586 membrane-associated protein; KEGG: nml:Namu_0645 SNARE associated Golgi protein; SPTR: C0W0A7 Putative uncharacterized protein; PFAM: SNARE associated Golgi protein.
       0.800
Arch_0690
ABC transporter related protein; COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: jde:Jden_1534 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: D1BF11 ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter.
  
    0.708
Arch_0689
ABC-3 protein; COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: bcv:Bcav_1773 ABC-3 protein; PFAM: ABC-3 protein; SPTR: C0W322 Metal cation ABC superfamily ATP binding cassette transporter, membrane protein; PFAM: ABC 3 transport family.
  
    0.698
Arch_0691
Periplasmic solute binding protein; COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: gym:GYMC10_3445 periplasmic solute binding protein; PFAM: periplasmic solute binding protein; SPTR: C0W0B1 Metal ABC superfamily ATP binding cassette transporter, binding protein; PFAM: Periplasmic solute binding protein family.
  
    0.674
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
  
 0.610
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.517
Arch_0693
YibE/F family protein; COGs: COG5438 multitransmembrane protein; InterPro IPR012507; KEGG: bcv:Bcav_1777 YibE/F family protein; PFAM: YibE/F family protein; SPTR: D0WQT4 Putative membrane protein; PFAM: YibE/F-like protein.
       0.483
lysS-2
COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR016027:IPR002313:IPR006195:IPR012340:IPR 007424:IPR007425:IPR007426:IPR004365:IPR004364:IPR018149; KEGG: cdi:DIP2138 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Q6NEX1 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Uncharacterized conserved protein (DUF2156); tRNA synthetases class II (D, K and N); OB-fo [...]
       0.480
Arch_0694
TIM-barrel protein, nifR3 family; COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR018517:IPR013785:IPR004652:IPR001269; KEGG: xce:Xcel_2165 TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; SPTR: D0WQT3 Putative tRNA-dihydrouridine synthase; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family.
       0.461
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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