STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0781Type III site-specific deoxyribonuclease; COGs: COG3587 Restriction endonuclease; InterPro IPR006935; KEGG: bfa:Bfae_05380 restriction endonuclease; PFAM: type III restriction protein res subunit; PRIAM: Type III site-specific deoxyribonuclease; SPTR: C7MHJ5 Restriction endonuclease; PFAM: Type III restriction enzyme, res subunit. (988 aa)    
Predicted Functional Partners:
Arch_0780
Site-specific DNA-methyltransferase (adenine-specific); COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002295:IPR002052:IPR002941; KEGG: pct:PC1_0848 site-specific DNA-methyltransferase (adenine-specific); PFAM: DNA methylase N-4/N-6 domain protein; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: C6D9W3 Site-specific DNA-methyltransferase (Adenine-specific); PFAM: DNA methylase.
 
  
 0.964
Arch_0782
SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001:IPR001650:IPR014021:IPR000330; KEGG: bfa:Bfae_05330 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: C7MHJ1 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
 
    0.892
Arch_1582
KEGG: dda:Dd703_3047 site-specific DNA-methyltransferase (adenine-specific); SPTR: C6CCH7 Site-specific DNA-methyltransferase (Adenine-specific).
 
  
 0.874
Arch_0519
DNA methylase N-4/N-6 domain protein; COGs: COG0863 DNA modification methylase; InterProIPR002052:IPR002295:IPR003115:IPR002941:IPR 015840; KEGG: pac:PPA1586 ParB family DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: C2KNX9 ParB family DNA methylase; manually curated; PFAM: ParB-like nuclease domain; DNA methylase.
     
 0.620
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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