STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0838ErfK/YbiS/YcfS/YnhG family protein; InterPro IPR005490; KEGG: bfa:Bfae_10350 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: C0W945 Putative uncharacterized protein (Fragment); PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain. (475 aa)    
Predicted Functional Partners:
Arch_1727
Peptidoglycan glycosyltransferase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR005543:IPR001264:IPR001460; KEGG: bcv:Bcav_0604 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PASTA domain containing protein; PRIAM: Peptidoglycan glycosyltransferase; SPTR: D0WK60 Penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; PASTA domain.
  
   
 0.553
Arch_1803
Peptidoglycan glycosyltransferase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR001264:IPR001460; KEGG: bcv:Bcav_4182 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: D0WL42 Penicillin-binding protein; manually curated; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
  
   
 0.549
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.548
Arch_0244
PKD domain containing protein; InterProIPR000601:IPR001087:IPR013831:IPR002035:IPR 013830; KEGG: pac:PPA1665 hypothetical protein; PFAM: PKD domain containing protein; lipolytic protein G-D-S-L family; SMART: PKD domain containing protein; SPTR: C0VY99 Putative uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase; PKD domain.
 
   
 0.523
Arch_0242
KEGG: xce:Xcel_3007 hypothetical protein; SPTR: A7BBM1 Putative uncharacterized protein.
 
     0.513
Arch_1796
COGs: COG4932 outer membrane protein; InterPro IPR008454; KEGG: soz:Spy49_0112 putative collagen binding protein; PFAM: Cna B domain protein; SPTR: B5XJF1 Putative collagen binding protein; TIGRFAM: LPXTG-motif cell wall anchor domain.
  
   
 0.513
Arch_0709
COGs: COG1183 Phosphatidylserine synthase; KEGG: pla:Plav_1484 phosphatidylcholine synthase; SPTR: C0VXW7 Phosphatidylcholine synthase.
  
    0.477
Arch_0339
KEGG: pac:PPA1037 hypothetical protein; SPTR: C0W060 Putative uncharacterized protein.
  
     0.470
Arch_0426
Protein of unknown function DUF1212; COGs: COG2966 conserved hypothetical protein; InterPro IPR010619; KEGG: rmu:RMDY18_06380 hypothetical protein; PFAM: protein of unknown function DUF1212; SPTR: C0W2A9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1212).
 
     0.426
Arch_1754
KEGG: bcv:Bcav_0376 hypothetical protein; SPTR: C0VY58 Putative uncharacterized protein.
  
     0.401
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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