STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_0938COGs: COG2345 transcriptional regulator protein; InterPro IPR001845; KEGG: jde:Jden_1139 putative transcriptional regulator; PFAM: regulatory protein ArsR; SPTR: D0WMJ3 Putative DNA-binding transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family. (243 aa)    
Predicted Functional Partners:
Arch_0937
FeS assembly protein SufB; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR010231:IPR000825; KEGG: bcv:Bcav_2340 FeS assembly protein SufB; PFAM: SufBD protein; SPTR: C5BVZ0 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
  
  
 0.962
Arch_0936
FeS assembly protein SufD; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR011542:IPR000825; KEGG: bcv:Bcav_2339 FeS assembly protein SufD; PFAM: SufBD protein; SPTR: A7BC52 Putative uncharacterized protein; TIGRFAM: FeS assembly protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1.
  
  
 0.877
Arch_0935
Rieske (2Fe-2S) iron-sulfur domain protein; COGs: COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; InterPro IPR017941; KEGG: bcv:Bcav_2338 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: C1RHU4 Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain.
       0.856
Arch_0932
SUF system FeS assembly protein, NifU family; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR011341:IPR002871; KEGG: blt:Balat_0915 hypothetical protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: D0WMJ9 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
  
  
 0.830
Arch_0934
FeS assembly ATPase SufC; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003593:IPR003439:IPR010230; KEGG: jde:Jden_1143 FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C0VZ94 ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
  
    0.787
Arch_0933
Cysteine desulfurase, SufS subfamily; COGs: COG0520 Selenocysteine lyase; InterPro IPR015424:IPR015421:IPR010970:IPR000192; KEGG: xce:Xcel_1361 cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SPTR: D0WMJ8 Cysteine desulfurase SufS; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.768
Arch_0688
Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: bcv:Bcav_1772 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C5C4Q0 Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
  
    0.689
Arch_0931
Protein of unknown function DUF59; COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744; KEGG: ace:Acel_1140 hypothetical protein; PFAM: protein of unknown function DUF59; SPTR: A3TLB3 Putative uncharacterized protein; PFAM: Domain of unknown function DUF59.
       0.673
Arch_1427
COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: bcv:Bcav_1165 cell envelope-related protein transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: D0WPL0 Transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain.
  
    0.661
Arch_0719
KEGG: bcv:Bcav_1811 hypothetical protein; SPTR: C0W3W7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3052).
  
     0.601
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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