STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1187Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR015358:IPR012925; KEGG: cur:cur_0383 MerR family transcriptional regulator; PFAM: TipAS antibiotic-recognition domain protein; regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; SPTR: B1VF04 Putative transcriptional regulator (MerR family); PFAM: MerR family regulatory protein; MerR, DNA binding; TipAS antibiotic-recognition domain. (262 aa)    
Predicted Functional Partners:
Arch_1186
KEGG: hypothetical protein; SPTR: B7GA82 Predicted protein.
       0.773
Arch_1181
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR003439:IPR017940:IPR017871:IPR 002345:IPR003593; KEGG: ckp:ckrop_1536 putative ABC transport system; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A7BC13 Putative uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter.
  
    0.513
Arch_1182
ABC transporter related protein; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR011527:IPR003439:IPR017940:IPR017871:IPR 003593:IPR001140; KEGG: ele:Elen_1490 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: C0E4Q8 Putative uncharacterized protein; PFAM: ABC transporter transmembrane region; ABC transporter.
  
    0.513
Arch_1185
InterPro IPR011733; KEGG: mpa:MAP3733c hypothetical protein; PFAM: Conserved hypothetical CHP02185 integral membrane family protein; SPTR: A7BC09 Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Hypothetical bacterial integral membrane protein (Trep_Strep); TIGRFAM: conserved hypothetical integral membrane protein TIGR02185.
       0.510
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.504
Arch_1180
InterPro IPR009057:IPR001647:IPR012287; KEGG: cjk:jk0810 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C5VD50 Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
       0.497
Arch_1183
ABC transporter related protein; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR017871:IPR003593; KEGG: ckp:ckrop_1533 ABC transport system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C4LKA7 ABC transport system, ATP-binding protein; PFAM: ABC transporter.
       0.497
Arch_1184
Cobalt transport protein; InterPro IPR003339; KEGG: car:cauri_0787 putative ABC transport system, permease protein; PFAM: cobalt transport protein; SPTR: D0YS34 Putative ABC transporter associated permease; PFAM: Cobalt transport protein.
       0.497
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.475
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.449
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.