STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1313Transcriptional regulator, XRE family; InterPro IPR001387:IPR010982; KEGG: cjk:jk0700 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Q4JWE5 Putative uncharacterized protein; PFAM: Helix-turn-helix. (109 aa)    
Predicted Functional Partners:
Arch_1312
KEGG: cjk:jk0699 hypothetical protein; SPTR: Q4JWE6 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955).
 
  
 0.829
Arch_1311
KEGG: cjk:jk0698 hypothetical protein; SPTR: Q4JWE7 Putative uncharacterized protein; manually curated.
       0.746
Arch_1314
COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145:IPR020103:IPR006224; KEGG: sma:SAV_6707 ribosomal pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: D0WNY8 RNA pseudouridylate synthase family protein; PFAM: RNA pseudouridylate synthase.
  
    0.567
Arch_0808
YodA domain protein; InterPro IPR011038:IPR012674:IPR015304; KEGG: apr:Apre_0499 YodA domain protein; PFAM: YodA domain protein; SPTR: C7RGD5 YodA domain protein; PFAM: YodA.
  
     0.476
Arch_1315
Phosphate acetyltransferase; COGs: COG0280 Phosphotransacetylase; InterPro IPR002505:IPR004614; KEGG: bfa:Bfae_08770 phosphotransacetylase; PFAM: phosphate acetyl/butaryl transferase; SPTR: D0WNY9 Putative phosphate acetyltransferase pta; TIGRFAM: phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase.
       0.415
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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