STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1427COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: bcv:Bcav_1165 cell envelope-related protein transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: D0WPL0 Transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain. (450 aa)    
Predicted Functional Partners:
Arch_1426
COGs: COG1316 Transcriptional regulator; InterPro IPR004474; KEGG: bcv:Bcav_1166 cell envelope-related protein transcriptional attenuator; PFAM: cell envelope-related transcriptional attenuator; SPTR: C0W8B2 Transcriptional regulator; TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain.
 
   
0.926
Arch_0938
COGs: COG2345 transcriptional regulator protein; InterPro IPR001845; KEGG: jde:Jden_1139 putative transcriptional regulator; PFAM: regulatory protein ArsR; SPTR: D0WMJ3 Putative DNA-binding transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family.
  
    0.661
Arch_1425
KEGG: xce:Xcel_2550 hypothetical protein; SPTR: D1BWZ7 Putative uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR03089.
       0.593
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
     0.512
Arch_0359
Glycosyl transferase, family 4, conserved region; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480:IPR018481; KEGG: jde:Jden_1782 glycosyl transferase family 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: D0WRT0 Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase family 4.
 
  
 0.500
Arch_0146
Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR007167:IPR011991:IPR008988; KEGG: bfa:Bfae_31300 Mn-dependent transcriptional regulator; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: C7MB03 Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
   
    0.478
Arch_0756
KEGG: bcv:Bcav_1909 hypothetical protein; SPTR: D0WQK7 Putative transcriptional regulatory protein.
   
    0.461
Arch_1803
Peptidoglycan glycosyltransferase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR001264:IPR001460; KEGG: bcv:Bcav_4182 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: D0WL42 Penicillin-binding protein; manually curated; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
  
    0.448
Arch_0886
Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.428
Arch_1767
Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: ami:Amir_0404 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C6WGQ5 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
    0.422
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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