STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1435VanW family protein; COGs: COG2720 Uncharacterized vancomycin resistance protein; InterPro IPR007391; KEGG: jde:Jden_0796 VanW family protein; PFAM: VanW family protein; SPTR: D0WPN1 VanW like protein; PFAM: Putative peptidoglycan binding domain; VanW like protein. (566 aa)    
Predicted Functional Partners:
Arch_1437
GTP-binding protein TypA; COGs: COG1217 membrane GTPase involved in stress response; InterProIPR000795:IPR004161:IPR000640:IPR005225:IPR 006298:IPR009022:IPR009000; KEGG: jde:Jden_0793 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; SPTR: D0WPN3 GTP-binding protein TypA/BipA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small [...]
       0.822
Arch_1436
KEGG: nca:Noca_3804 hypothetical protein; SPTR: D0WPN2 Anion transporter.
       0.790
Arch_1434
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.624
Arch_0737
KEGG: stp:Strop_2530 hypothetical protein; SPTR: D0WQM7 Putative oxidoreductase.
  
     0.582
Arch_1438
Hypothetical protein; KEGG: lxx:Lxx16370 integral membrane protein; SPTR: Q6ADX4 Integral membrane protein; PFAM: Protein of unknown function (DUF2581).
       0.574
Arch_1433
COGs: COG0372 Citrate synthase; InterProIPR002020:IPR016142:IPR010953:IPR016141:IPR 019810; KEGG: ami:Amir_0528 citrate synthase I; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: C0W847 Citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); Belongs to the citrate synthase family.
       0.458
Arch_0990
Membrane-flanked domain protein; InterPro IPR005182; KEGG: nfa:nfa9960 hypothetical protein; PFAM: membrane-flanked domain; SPTR: D0WN69 Bacterial membrane flanked domain protein; manually curated; PFAM: Bacterial membrane flanked domain.
 
     0.439
Arch_0750
COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterProIPR012337:IPR000305:IPR006055:IPR006054:IPR 013520; KEGG: bcv:Bcav_1900 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; SPTR: D0WQL3 Putative DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
 
     0.436
Arch_1407
InterPro IPR002575:IPR011009; KEGG: jde:Jden_2348 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: D0WPG1 Phosphotransferase enzyme family protein; PFAM: Phosphotransferase enzyme family.
  
     0.432
Arch_0824
InterPro IPR003849; KEGG: xce:Xcel_1669 preprotein translocase, YajC subunit; PFAM: YajC family protein; SPTR: D0WQE7 Putative preprotein translocase, YajC subunit; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit.
  
     0.419
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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