STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1480Uracil-DNA glycosylase superfamily; COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; InterPro IPR005122; KEGG: bln:Blon_0119 uracil-DNA glycosylase superfamily; PFAM: Uracil-DNA glycosylase superfamily; SPTR: B7GT25 Uracil-DNA glycosylase superfamily; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: mismatch-specific thymine-DNA glycosylate (mug). (197 aa)    
Predicted Functional Partners:
Arch_0184
Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR005135:IPR004808; KEGG: jde:Jden_2428 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: D0WLN3 Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).
  
 
 0.804
Arch_1274
Exodeoxyribonuclease III Xth; COGs: COG0708 Exonuclease III; InterPro IPR004808:IPR005135; KEGG: jde:Jden_0698 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: D0WNQ6 Exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).
  
 
 0.804
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
       0.493
Arch_1481
GCN5-related N-acetyltransferase; COGs: COG3981 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: krh:KRH_21070 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1RPY2 Predicted acetyltransferase, COG3981; PFAM: Acetyltransferase (GNAT) family.
       0.445
Arch_1482
KEGG: dhd:Dhaf_2491 hypothetical protein; SPTR: C7HA54 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2812).
       0.445
Arch_1483
InterPro IPR005149:IPR011991; KEGG: cby:CLM_2307 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR family protein; SPTR: C1FQA7 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family.
       0.445
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.420
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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