STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Arch_1480Uracil-DNA glycosylase superfamily; COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; InterPro IPR005122; KEGG: bln:Blon_0119 uracil-DNA glycosylase superfamily; PFAM: Uracil-DNA glycosylase superfamily; SPTR: B7GT25 Uracil-DNA glycosylase superfamily; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: mismatch-specific thymine-DNA glycosylate (mug). (197 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.481
Arch_1481
GCN5-related N-acetyltransferase; COGs: COG3981 acetyltransferase; InterPro IPR000182:IPR016181; KEGG: krh:KRH_21070 putative acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: C1RPY2 Predicted acetyltransferase, COG3981; PFAM: Acetyltransferase (GNAT) family.
       0.445
Arch_1482
KEGG: dhd:Dhaf_2491 hypothetical protein; SPTR: C7HA54 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2812).
       0.445
Arch_1483
InterPro IPR005149:IPR011991; KEGG: cby:CLM_2307 transcriptional regulator, PadR family; PFAM: transcriptional regulator PadR family protein; SPTR: C1FQA7 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family.
       0.445
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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