STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1489General substrate transporter; COGs: COG2814 Arabinose efflux permease; InterPro IPR005828:IPR016196:IPR005829; KEGG: kpn:KPN_03142 putative general substrate transporter; PFAM: General substrate transporter; SPTR: C0W1U5 Major facilitator family protein transporter; PFAM: Sugar (and other) transporter. (454 aa)    
Predicted Functional Partners:
Arch_1490
Radical SAM domain protein; COGs: COG0641 Arylsulfatase regulator (Fe-S oxidoreductase); InterPro IPR007197; KEGG: tmz:Tmz1t_1479 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: D0YU66 Anaerobic sulfatase-maturating enzyme; PFAM: Radical SAM superfamily.
 
     0.584
Arch_0333
COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680; KEGG: xce:Xcel_2442 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: D0WNV7 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.568
Arch_1491
InterPro IPR002781; KEGG: nml:Namu_0360 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: C0VYF1 Membrane permease protein; PFAM: Sulfite exporter TauE/SafE.
       0.514
Arch_1487
Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR000917:IPR017849:IPR017850; KEGG: bfa:Bfae_28950 arylsulfatase A family protein; PFAM: sulfatase; SPTR: C0W1U3 Sulfatase; PFAM: Sulfatase.
  
    0.486
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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