STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1579KEGG: cai:Caci_5930 hypothetical protein; SPTR: C2GDL7 Putative uncharacterized protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence. (254 aa)    
Predicted Functional Partners:
Arch_1580
N-6 DNA methylase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: dvl:Dvul_0488 N-6 DNA methylase; PFAM: N-6 DNA methylase; SPTR: C8RRG5 Type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase; PFAM: N-6 DNA Methylase; HsdM N-terminal domain.
       0.665
Arch_1581
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.664
tatA
Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.510
Arch_0604
DivIVA domain repeat protein; InterPro IPR019932:IPR019933; KEGG: bcv:Bcav_2501 hypothetical protein; SPTR: D0WR37 DivIVA domain repeat protein; TIGRFAM: DivIVA domain repeat protein; DivIVA domain; TIGRFAM: DivIVA domain; DivIVA domain repeat protein.
  
     0.487
Arch_1095
Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: xce:Xcel_2358 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: D1BVQ5 Transcriptional regulator, IclR family; manually curated; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator.
  
    0.478
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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