STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1685InterPro IPR005094; KEGG: lxx:Lxx07700 mobilization protein; PFAM: Relaxase/mobilization nuclease family protein; SPTR: C2BRG6 Possible mobilization protein; PFAM: Relaxase/Mobilisation nuclease domain. (455 aa)    
Predicted Functional Partners:
Arch_0393
UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR002121:IPR014016:IPR014017:IPR000212; KEGG: bcv:Bcav_2897 UvrD/REP helicase; PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; SPTR: D0WRX3 ATP-dependent DNA helicase II; PFAM: HRDC domain; UvrD/REP helicase.
  
 
 0.996
Arch_1690
TRAG family protein; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: apr:Apre_1805 TraG family protein; PFAM: TRAG family protein; SPTR: C2BRH0 TraG/TraD family protein; PFAM: TraG/TraD family.
 
   
 0.958
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
   
 
  0.889
Arch_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.879
Arch_1684
Mobilisation protein; InterPro IPR008687; KEGG: lxx:Lxx07715 hypothetical protein; PFAM: mobilisation protein; SPTR: Q6AG08 Putative uncharacterized protein; PFAM: Bacterial mobilisation protein (MobC).
  
    0.824
Arch_1686
KEGG: efa:EF2329 hypothetical protein; SPTR: C2BRG7 Putative uncharacterized protein.
       0.807
Arch_1694
Transfer complex protein; COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: lxx:Lxx07680 transfer complex protein; SPTR: C2BRH4 Transfer complex protein; PFAM: Domain of unknown function DUF87.
 
   
 0.803
Arch_1535
KEGG: bln:Blon_1670 hypothetical protein; SPTR: C2BRH1 Putative uncharacterized protein.
 
     0.782
Arch_1687
KEGG: lhk:LHK_01554 hypothetical protein; SPTR: A7B3X1 Putative uncharacterized protein.
       0.773
Arch_1688
KEGG: hsl:OE4030F hypothetical protein; SPTR: C0D047 Sensor protein (Fragment).
       0.773
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.