STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1693COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR007921:IPR008258; KEGG: sgr:SGR_3923 putative secreted transglycosylase; PFAM: Lytic transglycosylase catalytic; CHAP domain containing protein; SPTR: C0BU72 Putative uncharacterized protein; PFAM: Transglycosylase SLT domain; CHAP domain. (547 aa)    
Predicted Functional Partners:
Arch_1694
Transfer complex protein; COGs: COG3451 Type IV secretory pathway VirB4 protein; KEGG: lxx:Lxx07680 transfer complex protein; SPTR: C2BRH4 Transfer complex protein; PFAM: Domain of unknown function DUF87.
  
  
 0.831
Arch_1692
KEGG: bln:Blon_1670 hypothetical protein; SPTR: C2BRH1 Putative uncharacterized protein.
     
 0.776
Arch_1695
KEGG: bln:Blon_0504 hypothetical protein; SPTR: C2BRH5 Putative uncharacterized protein.
       0.608
Arch_1696
KEGG: bln:Blon_1669 hypothetical protein; SPTR: C2BRH6 Putative uncharacterized protein.
       0.599
Arch_0657
Peptidoglycan-binding lysin domain protein; InterPro IPR002482:IPR018392; KEGG: art:Arth_1469 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: D0WQY1 Putative LysM domain protein.
  
  
 0.538
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.514
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.493
Arch_0668
Peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR005311:IPR001460; KEGG: bcv:Bcav_2416 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: D0WQW3 Penicillin binding protein transpeptidase domain protein; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.
 
  
 0.468
Arch_1691
InterPro IPR019284; KEGG: ckr:CKR_2857 hypothetical protein; PFAM: Protein of unknown function DUF2335, membrane; SPTR: B9E5Y3 Putative uncharacterized protein; PFAM: Predicted membrane protein (DUF2335).
       0.452
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.410
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.