STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1731L-fucose transporter; COGs: COG0738 Fucose permease; InterPro IPR016196:IPR011701:IPR005275; KEGG: pac:PPA1213 L-fucose permease; PFAM: major facilitator superfamily MFS_1; SPTR: D0YUD1 L-fucose:H+ symporter permease; TIGRFAM: L-fucose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease. (453 aa)    
Predicted Functional Partners:
Arch_1730
InterPro IPR003006; KEGG: pac:PPA1212 hypothetical protein; SPTR: C0W0W1 DeoX family protein.
 
     0.957
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
   
 0.918
Arch_1733
Transcriptional regulator, DeoR family; COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR009057:IPR007324; KEGG: krh:KRH_18930 deoxyribonucleoside regulator; PFAM: putative sugar-binding domain protein; SPTR: C0W0V8 DeoR family transcriptional regulator; PFAM: Putative sugar-binding domain.
 
     0.513
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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