STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1785Hypothetical protein; KEGG: dvm:DvMF_0774 CheA signal transduction histidine kinase; SPTR: D0WLD1 Putative SmpA/OmlA protein. (444 aa)    
Predicted Functional Partners:
Arch_1783
ATP-dependent helicase HrpB; COGs: COG1643 HrpA-like helicase; InterProIPR002464:IPR014001:IPR001650:IPR014021:IPR 011545:IPR007502:IPR013689:IPR010225; KEGG: tcu:Tcur_1990 ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; helicase-associated domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: D1BHA4 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; ATP-dependent helicase C-terminal; Helicase associated domain (HA2); [...]
       0.519
Arch_1784
Transcriptional regulator, TetR family; InterPro IPR018247:IPR009057:IPR001647; KEGG: sco:SCO5906 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C0VWX7 Possible transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family.
       0.518
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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