STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arch_1804Protein of unknown function UPF0118; COGs: COG0628 permease; InterPro IPR002549; KEGG: nfa:nfa32820 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: D0WL41 Putative uncharacterized protein; PFAM: Domain of unknown function DUF20. (414 aa)    
Predicted Functional Partners:
Arch_1803
Peptidoglycan glycosyltransferase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR012338:IPR001264:IPR001460; KEGG: bcv:Bcav_4182 glycosyl transferase family 51; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: D0WL42 Penicillin-binding protein; manually curated; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
       0.800
Arch_1805
InterPro IPR016196:IPR011701; KEGG: bcv:Bcav_4203 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: C1RM73 Major Facilitator Superfamily transporter; PFAM: Major Facilitator Superfamily.
 
     0.676
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.487
Arch_1806
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterProIPR003607:IPR002646:IPR006674:IPR014065:IPR 006675; KEGG: jde:Jden_2542 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: D0WL39 tRNA adenylyltransferase; TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; manually curated; PFAM: HD domain; Poly A polymerase head [...]
  
    0.471
Arch_1801
COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR016027:IPR000424:IPR011344:IPR012340; KEGG: xce:Xcel_3354 single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: D0WL44 Single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
       0.461
Your Current Organism:
Arcanobacterium haemolyticum
NCBI taxonomy Id: 644284
Other names: A. haemolyticum DSM 20595, Arcanobacterium haemolyticum ATCC 9345, Arcanobacterium haemolyticum CIP 103370, Arcanobacterium haemolyticum DSM 20595, Arcanobacterium haemolyticum str. DSM 20595, Arcanobacterium haemolyticum strain DSM 20595
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