STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD56133.1Lycopene beta-cyclase. (395 aa)    
Predicted Functional Partners:
EGD55846.1
COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.960
fabG
3-ketoacyl-(acyl-carrier-protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
   0.902
EGD56939.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.895
EGD55843.1
COG1562 Phytoene/squalene synthetase.
 
 
 0.893
EGD56940.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.830
EGD56135.1
ABC transporter-like protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
       0.780
EGD55847.1
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.725
EGD56250.1
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.666
EGD54530.1
Hypothetical protein.
  
     0.661
EGD53374.1
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
    
 0.657
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.