Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGD55698.1 | EGD55843.1 | SCNU_08293 | SCNU_06365 | ATPase; COG1239 Mg-chelatase subunit ChlI. | COG1562 Phytoene/squalene synthetase. | 0.622 |
EGD55698.1 | EGD55846.1 | SCNU_08293 | SCNU_06380 | ATPase; COG1239 Mg-chelatase subunit ChlI. | COG1233 Phytoene dehydrogenase and related proteins. | 0.680 |
EGD55698.1 | EGD56133.1 | SCNU_08293 | SCNU_04716 | ATPase; COG1239 Mg-chelatase subunit ChlI. | Lycopene beta-cyclase. | 0.537 |
EGD55843.1 | EGD55698.1 | SCNU_06365 | SCNU_08293 | COG1562 Phytoene/squalene synthetase. | ATPase; COG1239 Mg-chelatase subunit ChlI. | 0.622 |
EGD55843.1 | EGD55846.1 | SCNU_06365 | SCNU_06380 | COG1562 Phytoene/squalene synthetase. | COG1233 Phytoene dehydrogenase and related proteins. | 0.997 |
EGD55843.1 | EGD55847.1 | SCNU_06365 | SCNU_06385 | COG1562 Phytoene/squalene synthetase. | Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.983 |
EGD55843.1 | EGD56133.1 | SCNU_06365 | SCNU_04716 | COG1562 Phytoene/squalene synthetase. | Lycopene beta-cyclase. | 0.893 |
EGD55843.1 | EGD56683.1 | SCNU_06365 | SCNU_03992 | COG1562 Phytoene/squalene synthetase. | COG0460 Homoserine dehydrogenase. | 0.527 |
EGD55843.1 | rpoB | SCNU_06365 | SCNU_08546 | COG1562 Phytoene/squalene synthetase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.494 |
EGD55843.1 | rpoC | SCNU_06365 | SCNU_08541 | COG1562 Phytoene/squalene synthetase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.410 |
EGD55846.1 | EGD55698.1 | SCNU_06380 | SCNU_08293 | COG1233 Phytoene dehydrogenase and related proteins. | ATPase; COG1239 Mg-chelatase subunit ChlI. | 0.680 |
EGD55846.1 | EGD55843.1 | SCNU_06380 | SCNU_06365 | COG1233 Phytoene dehydrogenase and related proteins. | COG1562 Phytoene/squalene synthetase. | 0.997 |
EGD55846.1 | EGD55847.1 | SCNU_06380 | SCNU_06385 | COG1233 Phytoene dehydrogenase and related proteins. | Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.965 |
EGD55846.1 | EGD55848.1 | SCNU_06380 | SCNU_06390 | COG1233 Phytoene dehydrogenase and related proteins. | COG0685 5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. | 0.751 |
EGD55846.1 | EGD56133.1 | SCNU_06380 | SCNU_04716 | COG1233 Phytoene dehydrogenase and related proteins. | Lycopene beta-cyclase. | 0.960 |
EGD55846.1 | EGD56683.1 | SCNU_06380 | SCNU_03992 | COG1233 Phytoene dehydrogenase and related proteins. | COG0460 Homoserine dehydrogenase. | 0.705 |
EGD55846.1 | clpX | SCNU_06380 | SCNU_07813 | COG1233 Phytoene dehydrogenase and related proteins. | ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.692 |
EGD55846.1 | lexA | SCNU_06380 | SCNU_16154 | COG1233 Phytoene dehydrogenase and related proteins. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.623 |
EGD55846.1 | rpoB | SCNU_06380 | SCNU_08546 | COG1233 Phytoene dehydrogenase and related proteins. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.659 |
EGD55846.1 | rpoC | SCNU_06380 | SCNU_08541 | COG1233 Phytoene dehydrogenase and related proteins. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.645 |
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