STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD55354.1COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component. (338 aa)    
Predicted Functional Partners:
EGD55356.1
Cytochrome c-type biosynthesis protein CCDA; COG0785 Cytochrome c biogenesis protein.
 
  
 0.993
EGD55355.1
COG1333 ResB protein required for cytochrome c biosynthesis.
 
  
 0.992
EGD55357.1
Redoxin domain-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.951
hemL
COG0001 Glutamate-1-semialdehyde aminotransferase.
 
  
 0.917
EGD55365.1
uroporphyrin-III C-methyltransferase HemD; COG0007 Uroporphyrinogen-III methylase.
 
    0.870
EGD55358.1
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase.
  
    0.868
EGD56565.1
Putative integral membrane c-type cytochrome biogenesis protein DipZ; COG0785 Cytochrome c biogenesis protein.
  
  
 0.841
EGD54269.1
COG0785 Cytochrome c biogenesis protein.
  
  
 0.841
EGD55263.1
COG0785 Cytochrome c biogenesis protein.
  
  
 0.833
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.697
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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