STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD55406.1COG0288 Carbonic anhydrase. (205 aa)    
Predicted Functional Partners:
EGD56992.1
Hypothetical protein; COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
    
 0.981
EGD55407.1
HhH-GPD family protein; COG1194 A/G-specific DNA glycosylase.
     
 0.854
EGD55405.1
Hypothetical protein.
       0.772
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.758
EGD53647.1
COG0659 Sulfate permease and related transporters (MFS superfamily).
 
 
 0.736
EGD53270.1
SulP family transporter; COG0659 Sulfate permease and related transporters (MFS superfamily).
 
 
 0.703
EGD54621.1
Sulphate transporter; COG0659 Sulfate permease and related transporters (MFS superfamily).
 
 
 0.691
EGD54306.1
Sulphate transporter; COG0659 Sulfate permease and related transporters (MFS superfamily).
  
 
 0.621
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.443
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.