STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD55470.13-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase-like protein; COG0366 Glycosidases. (291 aa)    
Predicted Functional Partners:
EGD56546.1
COG0708 Exonuclease III.
   
 0.730
EGD55018.1
Exodeoxyribonuclease III Xth; COG0708 Exonuclease III.
   
 0.730
EGD54275.1
Exodeoxyribonuclease III Xth; COG0708 Exonuclease III.
   
 0.730
EGD53823.1
COG0708 Exonuclease III.
   
 0.730
ligC
COG1793 ATP-dependent DNA ligase.
 
  
 0.550
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.544
EGD53776.1
COG0648 Endonuclease IV.
  
 
 
 0.531
EGD55471.1
acid--CoA ligase; COG1042 Acyl-CoA synthetase (NDP forming).
       0.504
EGD56857.1
HhH-GPD family protein; COG0177 Predicted EndoIII-related endonuclease.
 
 
 
 0.491
EGD56588.1
DEAD/H associated domain-containing protein; COG1201 Lhr-like helicases.
 
  
 0.487
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.