STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD55043.1GntR domain-containing protein; COG1802 Transcriptional regulators. (212 aa)    
Predicted Functional Partners:
EGD55042.1
COG0477 Permeases of the major facilitator superfamily.
 
     0.902
EGD55743.1
Regulatory protein GntR HTH; COG1802 Transcriptional regulators.
  
     0.770
EGD53665.1
COG1802 Transcriptional regulators.
  
     0.770
EGD53720.1
Transcriptional regulator, GntR family protein; COG2186 Transcriptional regulators.
  
  
 0.636
EGD55041.1
Hypothetical protein.
       0.595
EGD54260.1
COG2186 Transcriptional regulators.
  
  
 0.457
EGD56585.1
COG1414 Transcriptional regulator.
  
    0.444
EGD56274.1
COG1414 Transcriptional regulator.
  
    0.442
EGD55044.1
Malate dehydrogenase (oxaloacetate- decarboxylating); COG0281 Malic enzyme.
       0.436
EGD53565.1
COG1414 Transcriptional regulator.
  
    0.428
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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