STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD55107.1Transmembrane efflux protein; COG0477 Permeases of the major facilitator superfamily. (508 aa)    
Predicted Functional Partners:
EGD53427.1
Mfs transporter; COG0477 Permeases of the major facilitator superfamily.
  
     0.767
EGD54929.1
COG0477 Permeases of the major facilitator superfamily.
  
     0.747
EGD56577.1
Multidrug ABC transporter; COG0477 Permeases of the major facilitator superfamily.
  
    0.688
EGD55106.1
Helix-turn-helix type 11 domain-containing protein; COG2378 Predicted transcriptional regulator.
       0.605
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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