STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD54162.1Hypothetical protein; COG1522 Transcriptional regulators. (174 aa)    
Predicted Functional Partners:
EGD55704.1
uroporphyrin-III C-methyltransferase; COG0007 Uroporphyrinogen-III methylase.
  
 
 0.723
EGD54161.1
COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
    
 0.699
EGD56391.1
PTS system, N-acetylglucosamine-specific IIBC subunit; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
   
 
  0.676
EGD54163.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.647
EGD54159.1
Branched-chain alpha-keto acid dehydrogenase subunit E2; COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes.
    
  0.644
EGD54160.1
COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
     
 0.590
EGD53834.1
COG3162 Predicted membrane protein.
  
     0.508
EGD54628.1
COG0067 Glutamate synthase domain 1.
     
 0.460
EGD53517.1
Lysine exporter protein (LYSE/YGGA); COG1280 Putative threonine efflux protein.
 
   
 0.459
EGD54521.1
Hypothetical protein.
  
     0.411
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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