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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD54189.1Hypothetical protein. (369 aa)    
Predicted Functional Partners:
EGD54188.1
COG1309 Transcriptional regulator.
 
     0.878
EGD54187.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
     0.857
EGD54190.1
Putative mandelate racemase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.800
EGD54191.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
     0.688
EGD54292.1
Hypothetical protein.
  
     0.631
EGD55145.1
Hypothetical protein.
  
     0.593
EGD55261.1
COG1309 Transcriptional regulator.
  
     0.593
EGD55287.1
Carboxymuconolactone decarboxylase.
  
     0.525
EGD54358.1
Putative esterase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
     0.518
EGD56318.1
Hypothetical protein.
  
     0.501
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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