STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD53959.1Glycosidase; COG2730 Endoglucanase. (828 aa)    
Predicted Functional Partners:
EGD56432.1
COG1331 Highly conserved protein containing a thioredoxin domain.
   
 0.924
EGD56902.1
Hypothetical protein.
    
  0.672
EGD57044.1
Low-density lipoprotein receptor YWTD repeat protein.
    
  0.672
EGD54532.1
Hypothetical protein.
    
  0.672
EGD54244.1
Hypothetical protein.
    
  0.672
EGD54081.1
Cell wall arabinan synthesis protein.
    
  0.672
EGD54082.1
Cell wall arabinan synthesis protein.
    
  0.672
EGD54083.1
Cell wall arabinan synthesis protein.
    
  0.672
EGD53840.1
Excalibur domain-containing protein.
    
  0.672
EGD53511.1
Cell wall arabinan synthesis protein.
    
  0.672
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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