STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD54033.1ABC transporter-like protein; COG1126 ABC-type polar amino acid transport system, ATPase component. (242 aa)    
Predicted Functional Partners:
EGD54035.1
Polar amino acid ABC transporter inner membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 
 0.999
EGD54036.1
Glutamate abc transporter integral membrane subunit glud; COG0765 ABC-type amino acid transport system, permease component.
 0.999
EGD54034.1
Extracellular solute-binding protein family 3 protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.998
EGD53743.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter membrane protein, PAAT family; amino acid ABC transporter substrate-binding protein, PAAT family.
 0.994
EGD55949.1
Abc transporter integral membrane subunit; COG0765 ABC-type amino acid transport system, permease component.
 0.979
EGD56099.1
COG0765 ABC-type amino acid transport system, permease component.
 0.961
EGD56100.1
COG0765 ABC-type amino acid transport system, permease component.
 0.959
EGD56793.1
ABC transporter substrate-binding/permease protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 0.912
EGD53788.1
Extracellular solute-binding protein family 3 protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.881
EGD55948.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.834
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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