STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD53647.1COG0659 Sulfate permease and related transporters (MFS superfamily). (548 aa)    
Predicted Functional Partners:
EGD54951.1
COG3321 Polyketide synthase modules and related proteins.
    
 
 0.882
EGD55815.1
Cytochrome b/b6 domain-containing protein; COG1290 Cytochrome b subunit of the bc complex.
    
   0.866
EGD56669.1
COG0420 DNA repair exonuclease.
   
   0.842
EGD55525.1
COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
  
 
 0.831
EGD54628.1
COG0067 Glutamate synthase domain 1.
    
  0.795
EGD56406.1
Protein-tyrosine-phosphatase; COG2365 Protein tyrosine/serine phosphatase.
    
   0.785
EGD54053.1
COG2365 Protein tyrosine/serine phosphatase.
    
   0.785
EGD53844.1
COG2365 Protein tyrosine/serine phosphatase.
    
   0.785
EGD55406.1
COG0288 Carbonic anhydrase.
 
 
 0.736
EGD57136.1
Heat shock protein DnaJ domain-containing protein; COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain.
    
   0.696
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.