STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD53596.1CdaR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression. (391 aa)    
Predicted Functional Partners:
EGD53597.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.663
EGD55050.1
Putative transcriptional regulator; COG2508 Regulator of polyketide synthase expression.
 
     0.588
EGD54024.1
PTS system, fructose subfamily, IIC subunit; COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
      
 0.451
EGD53598.1
COG2303 Choline dehydrogenase and related flavoproteins.
       0.441
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.