STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGD53347.1Glycosyl transferase group 1 protein; COG0438 Glycosyltransferase. (376 aa)    
Predicted Functional Partners:
EGD53348.1
Type 11 methyltransferase; COG0500 SAM-dependent methyltransferases.
 
  
 0.947
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.870
EGD55250.1
UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases.
    
 
 0.814
EGD53254.1
Polysaccharide biosynthesis protein.
 
 
 0.784
EGD54379.1
HAD family hydrolase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 0.720
EGD53257.1
Hypothetical protein.
 
   
 0.713
EGD53250.1
Hypothetical protein.
  
   
 0.710
EGD53952.1
Hypothetical protein.
  
     0.628
EGD56723.1
COG0033 Phosphoglucomutase.
   
 0.624
EGD55039.1
COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.600
Your Current Organism:
Gordonia neofelifaecis
NCBI taxonomy Id: 644548
Other names: G. neofelifaecis NRRL B-59395, Gordonia neofelifaecis AD-6, Gordonia neofelifaecis NRRL B-59395, Gordonia neofelifaecis str. NRRL B-59395, Gordonia neofelifaecis strain NRRL B-59395, Gordonia sp. AD-6
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