sync_0018 protein (Synechococcus sp. CC9311)

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sync_0018

Hypothetical protein; Identified by Glimmer2; putative. (1111 aa)

Predicted Functional Partners:

sync_0963

0.740

sync_2914

0.740

sync_0156

0.657

secY

0.616

pilC

0.486

pilB

0.473

pilT

0.466

cinA

0.419

sync_0573

0.412

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cinA	pilB	sync_0302	sync_0021	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	0.545
cinA	pilC	sync_0302	sync_0019	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	0.415
cinA	sync_0018	sync_0302	sync_0018	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	Hypothetical protein; Identified by Glimmer2; putative.	0.419
cinA	sync_0156	sync_0302	sync_0156	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.538
pilB	cinA	sync_0021	sync_0302	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	0.545
pilB	pilC	sync_0021	sync_0019	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	0.998
pilB	pilT	sync_0021	sync_0020	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.853
pilB	sync_0018	sync_0021	sync_0018	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Hypothetical protein; Identified by Glimmer2; putative.	0.473
pilB	sync_0573	sync_0021	sync_0573	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.418
pilC	cinA	sync_0019	sync_0302	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	0.415
pilC	pilB	sync_0019	sync_0021	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	0.998
pilC	pilT	sync_0019	sync_0020	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	0.981
pilC	sync_0018	sync_0019	sync_0018	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Hypothetical protein; Identified by Glimmer2; putative.	0.486
pilC	sync_0573	sync_0019	sync_0573	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	Two-component hybrid sensor and regulator alr4878, putative; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.482
pilT	pilB	sync_0020	sync_0021	Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437.	0.853
pilT	pilC	sync_0020	sync_0019	Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.	0.981
pilT	sync_0018	sync_0020	sync_0018	Twitching motility protein; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.	Hypothetical protein; Identified by Glimmer2; putative.	0.466
secY	sync_0018	sync_0419	sync_0018	Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.	Hypothetical protein; Identified by Glimmer2; putative.	0.616
secY	sync_0156	sync_0419	sync_0156	Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.474
sync_0018	cinA	sync_0018	sync_0302	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.	0.419