Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0040Conserved hypothetical protein. (171 aa)    
Predicted Functional Partners:
sync_0039
Possible Penicillin amidase.
       0.773
sync_0937
Conserved hypothetical protein.
  
     0.705
sync_1860
Membrane associated GTPase.
  
     0.610
sync_0794
Uncharacterized membrane protein.
  
     0.602
sync_1557
Possible DNA polymerase III, epsilon subunit; Identified by match to protein family HMM PF00929.
  
     0.602
sync_1880
Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.
  
     0.585
sync_1146
Uncharacterized protein.
  
     0.578
sync_1036
Uncharacterized protein.
  
     0.560
sync_0041
Possible methyl-accepting chemotaxis protein.
       0.550
sync_0765
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.538
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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