STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0051Putative penicillin-binding protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. (601 aa)    
Predicted Functional Partners:
rodA
Putative rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.963
sync_2326
Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.
 
 0.940
ftsI
Cell division protein FtsI/penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
  
  
 
0.919
mreC
Cell shape-determining protein; Identified by match to protein family HMM PF04085.
 
 
 0.896
sync_0111
Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.
 
 
 
 0.818
sync_0049
Predicted membrane protein.
       0.800
sync_1562
Identified by match to protein family HMM PF00498; match to protein family HMM PF00905; match to protein family HMM PF00912.
 
 
 
 0.797
sync_0050
Conserved hypothetical protein; Identified by similarity to GB:CAE20222.1.
       0.788
sync_0732
Conserved hypothetical protein.
  
 
 0.778
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 0.712
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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