STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
sync_0051Putative penicillin-binding protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. (601 aa)    
Predicted Functional Partners:
rodA
Putative rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.948
mrcB
Membrane carboxypeptidase (penicillin-binding protein); Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
 
 
0.943
ftsI
Cell division protein FtsI/penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
  
  
0.919
sync_2326
Putative cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.
 
 0.915
sync_1364
D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666.
     
 0.913
sync_1283
D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF02557.
     
 0.906
mreC
Cell shape-determining protein; Identified by match to protein family HMM PF04085.
 
 
 0.868
sync_0111
Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.
 
 
 
 0.854
sync_0732
Conserved hypothetical protein.
  
 
 0.850
sync_0049
Predicted membrane protein.
       0.812
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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