STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0061Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (467 aa)    
Predicted Functional Partners:
sync_0157
Conserved hypothetical protein.
    
 0.902
sync_2171
Short-chain dehydrogenase/reductase family enzyme; Identified by match to protein family HMM PF00106.
   
 
 0.902
sync_1876
Lipase family protein.
   
 
  0.900
dgkA
Diacylglycerol kinase; Identified by match to protein family HMM PF01219.
   
 
  0.900
sync_0060
SpoIID/LytB domain protein; Identified by match to protein family HMM TIGR02669.
       0.800
rpmI
Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.
       0.622
sync_2671
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.599
sync_0812
Conserved hypothetical protein.
  
 
 0.592
sync_1446
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.592
sync_2447
O-linked GlcNAc transferase, putative; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.592
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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