Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0061Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (467 aa)    
Predicted Functional Partners:
sync_0157
Conserved hypothetical protein.
    
 0.901
sync_1876
Lipase family protein.
   
 
  0.900
sync_2171
Short-chain dehydrogenase/reductase family enzyme; Identified by match to protein family HMM PF00106.
   
 
  0.900
dgkA
Diacylglycerol kinase; Identified by match to protein family HMM PF01219.
     
  0.900
sync_0060
SpoIID/LytB domain protein; Identified by match to protein family HMM TIGR02669.
       0.812
rpmI
Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.
       0.646
sync_2671
Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.611
sync_0057
Putative photosystem I assembly related protein Ycf37; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.560
sync_1110
ParA family chromosome partitioning protein.
  
 
 0.538
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
       0.532
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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