sync_0099 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_0099

Predicted hydrolase; Identified by match to protein family HMM PF00561. (298 aa)

Predicted Functional Partners:

sync_0156

0.953

sync_0100

0.705

sync_0101

0.705

sync_1025

0.651

sync_0103

0.535

sync_0102

0.505

sync_2608

0.430

sync_1473

0.423

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0099	sync_0100	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Acriflavin resistance protein acrF; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.705
sync_0099	sync_0101	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.705
sync_0099	sync_0102	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	0.505
sync_0099	sync_0103	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Sugar kinase, ribokinase family protein; Identified by match to protein family HMM PF00294.	0.535
sync_0099	sync_0156	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.953
sync_0099	sync_1025	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.651
sync_0099	sync_1473	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Predicted calcineurin family phosphoesterase.	0.423
sync_0099	sync_2608	Predicted hydrolase; Identified by match to protein family HMM PF00561.	Phytoene desaturase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731.	0.430
sync_0100	sync_0099	Acriflavin resistance protein acrF; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Predicted hydrolase; Identified by match to protein family HMM PF00561.	0.705
sync_0100	sync_0101	Acriflavin resistance protein acrF; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.996
sync_0100	sync_0102	Acriflavin resistance protein acrF; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	0.572
sync_0101	sync_0099	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Predicted hydrolase; Identified by match to protein family HMM PF00561.	0.705
sync_0101	sync_0100	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Acriflavin resistance protein acrF; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.996
sync_0101	sync_0102	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	0.531
sync_0102	sync_0099	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	Predicted hydrolase; Identified by match to protein family HMM PF00561.	0.505
sync_0102	sync_0100	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	Acriflavin resistance protein acrF; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.572
sync_0102	sync_0101	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	Efflux transporter, RND family, MFP subunit subfamily; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.531
sync_0102	sync_0103	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	Sugar kinase, ribokinase family protein; Identified by match to protein family HMM PF00294.	0.634
sync_0103	sync_0099	Sugar kinase, ribokinase family protein; Identified by match to protein family HMM PF00294.	Predicted hydrolase; Identified by match to protein family HMM PF00561.	0.535
sync_0103	sync_0102	Sugar kinase, ribokinase family protein; Identified by match to protein family HMM PF00294.	Putative A/G-specific adenine glycosylase; Identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586.	0.634