sync_0113 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0113

Putative membrane protein. (167 aa)

Predicted Functional Partners:

mreC

0.988

sync_0111

0.866

minC

0.835

sync_0114

0.813

minD

0.716

sync_0110

0.585

sync_0115

0.518

lysS

0.417

nadE

0.417

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lysS	mreC	sync_0116	sync_0112	lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	0.454
lysS	sync_0111	sync_0116	sync_0111	lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.	Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.	0.418
lysS	sync_0113	sync_0116	sync_0113	lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.	Putative membrane protein.	0.417
lysS	sync_0114	sync_0116	sync_0114	lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.	Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.	0.405
lysS	sync_0115	sync_0116	sync_0115	lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.	Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.646
minC	minD	sync_0546	sync_0545	Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.	Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.	0.999
minC	mreC	sync_0546	sync_0112	Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	0.859
minC	sync_0111	sync_0546	sync_0111	Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.	Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.	0.467
minC	sync_0113	sync_0546	sync_0113	Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.	Putative membrane protein.	0.835
minD	minC	sync_0545	sync_0546	Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.	Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.	0.999
minD	mreC	sync_0545	sync_0112	Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	0.732
minD	sync_0111	sync_0545	sync_0111	Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.	Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.	0.506
minD	sync_0113	sync_0545	sync_0113	Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.	Putative membrane protein.	0.716
mreC	lysS	sync_0112	sync_0116	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	lysyl-tRNA synthetase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.454
mreC	minC	sync_0112	sync_0546	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.	0.859
mreC	minD	sync_0112	sync_0545	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	Septum site-determining protein MinD; Identified by match to protein family HMM TIGR01968.	0.732
mreC	sync_0110	sync_0112	sync_0110	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	Putative single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.	0.594
mreC	sync_0111	sync_0112	sync_0111	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.	0.990
mreC	sync_0113	sync_0112	sync_0113	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	Putative membrane protein.	0.988
mreC	sync_0114	sync_0112	sync_0114	Cell shape-determining protein; Identified by match to protein family HMM PF04085.	Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.	0.814