STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0114Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547. (447 aa)    
Predicted Functional Partners:
sync_1429
Lactose transport system permease protein; Identified by match to protein family HMM PF00528.
 
 0.981
sync_0977
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.978
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
 
 
 0.862
sync_1404
ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528.
 
 
 0.824
mreC
Cell shape-determining protein; Identified by match to protein family HMM PF04085.
  
    0.811
sync_0113
Putative membrane protein.
       0.811
sync_2395
Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.805
sync_0111
Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.
       0.796
sync_1405
ABC transporter for sugars, ATP binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.731
sync_0110
Putative single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
     
 0.678
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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