STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0114Bacterial extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547. (447 aa)    
Predicted Functional Partners:
sync_0977
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.980
sync_1429
Lactose transport system permease protein; Identified by match to protein family HMM PF00528.
 
 0.978
sync_1404
ABC transporter component, likely for sugar transport; Identified by match to protein family HMM PF00528.
 
 
 0.842
sync_1403
ABC transporter for sugars, membrane component; Identified by match to protein family HMM PF00528.
 
 
 0.841
mreC
Cell shape-determining protein; Identified by match to protein family HMM PF04085.
  
    0.814
sync_0113
Putative membrane protein.
       0.813
sync_0111
Rod shape determining protein; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904.
       0.805
sync_2395
Ferric iron ABC transporter (FeT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.710
sync_0215
Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.
  
     0.640
sync_0110
Putative single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621.
     
 0.603
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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