STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vapCMycobacterium tuberculosis PIN domain family subfamily; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (148 aa)    
Predicted Functional Partners:
sync_0136
Conserved hypothetical protein; Identified by match to protein family HMM PF01402.
       0.805
sync_2059
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the OprB family.
  
     0.603
sync_0306
Repeats containing protein.
  
     0.542
sync_1916
Hypothetical conserved protein; Identified by match to protein family HMM PF07681.
  
     0.530
sync_1043
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.524
sync_1880
Uncharacterized conserved protein; Identified by match to protein family HMM PF04357.
  
     0.514
sync_1040
Conserved hypothetical protein.
  
     0.501
sync_2123
Membrane protein, putative.
  
     0.501
sync_1932
Conserved hypothetical protein.
  
     0.497
sync_2139
Conserved hypothetical protein.
  
     0.497
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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