Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sync_0139Putative glycosyl transferase. (264 aa)    
Predicted Functional Partners:
sync_0150
Identified by match to protein family HMM PF02706.
 
  
 0.635
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.566
sync_0147
Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
 
  
 0.490
sync_0723
Galactosyl-1-phosphate transferase; Identified by match to protein family HMM PF02397.
 
  
 0.440
sync_0140
Hypothetical protein; Identified by Glimmer2; putative.
       0.438
sync_0183
Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.
 
  
 0.433
sync_0141
Glycosyl transferase family 11.
       0.420
sync_0138
Conserved hypothetical protein.
       0.410
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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