Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0149gumB protein; Identified by match to protein family HMM PF02563. (329 aa)    
Predicted Functional Partners:
sync_0150
Identified by match to protein family HMM PF02706.
 
 
 0.996
sync_0160
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.730
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
     
 0.685
sync_0192
Putative nucleotide sugar epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
  
  
 0.655
sync_0223
Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.
 
  
 0.654
sync_1661
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.637
mpr
MRP protein homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.616
sync_0723
Galactosyl-1-phosphate transferase; Identified by match to protein family HMM PF02397.
 
  
 0.596
sync_0147
Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
 
  
 0.586
sync_0183
Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.
 
  
 0.584
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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