sync_0149 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0149

gumB protein; Identified by match to protein family HMM PF02563. (329 aa)

Predicted Functional Partners:

sync_0150

0.999

sync_0192

0.789

sync_0156

0.759

mpr

0.687

sync_0160

0.672

sync_0223

0.650

sync_1661

0.619

sync_0147

0.576

sync_0723

0.563

sync_2564

0.554

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mpr	sync_0149	sync_0466	sync_0149	MRP protein homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	gumB protein; Identified by match to protein family HMM PF02563.	0.687
mpr	sync_0156	sync_0466	sync_0156	MRP protein homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.413
mpr	sync_0192	sync_0466	sync_0192	MRP protein homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	Putative nucleotide sugar epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.411
sync_0147	sync_0149	sync_0147	sync_0149	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	gumB protein; Identified by match to protein family HMM PF02563.	0.576
sync_0147	sync_0150	sync_0147	sync_0150	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Identified by match to protein family HMM PF02706.	0.946
sync_0147	sync_0156	sync_0147	sync_0156	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.510
sync_0147	sync_0160	sync_0147	sync_0160	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.829
sync_0147	sync_0192	sync_0147	sync_0192	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Putative nucleotide sugar epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.409
sync_0147	sync_0223	sync_0147	sync_0223	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.	0.566
sync_0147	sync_1661	sync_0147	sync_1661	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.456
sync_0149	mpr	sync_0149	sync_0466	gumB protein; Identified by match to protein family HMM PF02563.	MRP protein homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.687
sync_0149	sync_0147	sync_0149	sync_0147	gumB protein; Identified by match to protein family HMM PF02563.	Possible sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.	0.576
sync_0149	sync_0150	sync_0149	sync_0150	gumB protein; Identified by match to protein family HMM PF02563.	Identified by match to protein family HMM PF02706.	0.999
sync_0149	sync_0156	sync_0149	sync_0156	gumB protein; Identified by match to protein family HMM PF02563.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.759
sync_0149	sync_0160	sync_0149	sync_0160	gumB protein; Identified by match to protein family HMM PF02563.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.672
sync_0149	sync_0192	sync_0149	sync_0192	gumB protein; Identified by match to protein family HMM PF02563.	Putative nucleotide sugar epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.	0.789
sync_0149	sync_0223	sync_0149	sync_0223	gumB protein; Identified by match to protein family HMM PF02563.	Glycosyl transferase, group 1; Identified by match to protein family HMM PF00534.	0.650
sync_0149	sync_0723	sync_0149	sync_0723	gumB protein; Identified by match to protein family HMM PF02563.	Galactosyl-1-phosphate transferase; Identified by match to protein family HMM PF02397.	0.563
sync_0149	sync_1661	sync_0149	sync_1661	gumB protein; Identified by match to protein family HMM PF02563.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.619
sync_0149	sync_2564	sync_0149	sync_2564	gumB protein; Identified by match to protein family HMM PF02563.	Glycosyl transferase, family 2:TPR repeat; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.	0.554