STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0152Conserved hypothetical protein; Identified by similarity to GB:AAQ00379.1. (600 aa)    
Predicted Functional Partners:
sync_0151
Putative phosphatase; Identified by match to protein family HMM PF00782.
     
 0.774
sync_0150
Identified by match to protein family HMM PF02706.
       0.773
sync_0153
Conserved hypothetical protein; Identified by similarity to PIR:AB1913.
       0.773
sync_0963
Conserved hypothetical protein.
    
 
 0.699
sync_2914
Peptidase, S8A (subtilisin) family protein; Identified by match to protein family HMM PF00082; match to protein family HMM PF03160; Belongs to the peptidase S8 family.
    
 
 0.699
sync_1494
RNA polymerase sigma-70 factor family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
    
 
 0.690
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.465
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.