sync_0155 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

sync_0155

Conserved hypothetical protein. (343 aa)

Predicted Functional Partners:

sync_0156

0.740

sync_0154

0.736

sync_0812

0.682

sync_0256

0.640

sync_0235

0.622

sync_1110

0.618

sync_2671

0.611

sync_1451

0.594

sync_0157

0.486

sync_2472

0.479

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
sync_0154	sync_0155	Membrane protein, putative.	Conserved hypothetical protein.	0.736
sync_0154	sync_0156	Membrane protein, putative.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.992
sync_0154	sync_0157	Membrane protein, putative.	Conserved hypothetical protein.	0.515
sync_0155	sync_0154	Conserved hypothetical protein.	Membrane protein, putative.	0.736
sync_0155	sync_0156	Conserved hypothetical protein.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.740
sync_0155	sync_0157	Conserved hypothetical protein.	Conserved hypothetical protein.	0.486
sync_0155	sync_0235	Conserved hypothetical protein.	Conserved hypothetical protein.	0.622
sync_0155	sync_0256	Conserved hypothetical protein.	Conserved hypothetical protein.	0.640
sync_0155	sync_0812	Conserved hypothetical protein.	Conserved hypothetical protein.	0.682
sync_0155	sync_1110	Conserved hypothetical protein.	ParA family chromosome partitioning protein.	0.618
sync_0155	sync_1451	Conserved hypothetical protein.	Conserved hypothetical protein.	0.594
sync_0155	sync_2472	Conserved hypothetical protein.	Conserved hypothetical protein; Identified by similarity to PIR:AI2190.	0.479
sync_0155	sync_2671	Conserved hypothetical protein.	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.611
sync_0156	sync_0154	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Membrane protein, putative.	0.992
sync_0156	sync_0155	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.740
sync_0156	sync_0157	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.870
sync_0156	sync_0256	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.498
sync_0156	sync_0812	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.730
sync_0156	sync_1110	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	ParA family chromosome partitioning protein.	0.576
sync_0156	sync_2671	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.667