STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0169UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350. (376 aa)    
Predicted Functional Partners:
neuA-1
CMP-N-acetylneuraminic acid synthetase; Identified by match to protein family HMM PF02348.
 
  
 0.954
sync_0174
N-acetylneuraminic acid condensing enzyme; Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.923
sync_0177
Conserved hypothetical protein.
 
    0.913
neuA-2
Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.
 
  
 0.876
sync_0181
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.865
mviN-1
Integral membrane protein MviN; Identified by match to protein family HMM PF03023.
  
    0.782
sync_1879
ROK family sugar kinase; Identified by match to protein family HMM PF00480.
 
   
 0.781
sync_0176
Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
    0.743
hisH-1
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
  
    0.713
sync_0173
Pilin glycosylation protein PglB NMB1820.
 
     0.713
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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