STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0169UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350. (376 aa)    
Predicted Functional Partners:
sync_0174
N-acetylneuraminic acid condensing enzyme; Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
 
 0.992
neuA-1
CMP-N-acetylneuraminic acid synthetase; Identified by match to protein family HMM PF02348.
 
  
 0.960
sync_0177
Conserved hypothetical protein.
 
    0.908
neuA-2
Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.
 
  
 0.892
sync_0181
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.880
mviN-1
Integral membrane protein MviN; Identified by match to protein family HMM PF03023.
  
    0.784
sync_1879
ROK family sugar kinase; Identified by match to protein family HMM PF00480.
 
   
 0.770
sync_0185
Conserved hypothetical protein.
 
  
 0.768
sync_0179
Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.743
sync_0176
Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
    0.727
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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