STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0179Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (497 aa)    
Predicted Functional Partners:
sync_0192
Putative nucleotide sugar epimerase/dehydratase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.907
sync_0173
Pilin glycosylation protein PglB NMB1820.
 
   
 0.841
sync_0183
Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.
 
  
 0.807
sync_0185
Conserved hypothetical protein.
 
  
 0.796
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
  
    0.786
sync_0169
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350.
 
  
 0.743
sync_0181
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.735
sync_0174
N-acetylneuraminic acid condensing enzyme; Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.729
neuA-2
Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.
 
  
 0.722
sync_0180
Hypothetical protein; Identified by Glimmer2; putative.
       0.705
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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