sync_0183 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sync_0183

Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397. (184 aa)

Predicted Functional Partners:

sync_0150

0.947

sync_0173

0.863

sync_0160

0.829

rffM

0.819

sync_0179

0.807

sync_0181

0.786

neuA-2

0.781

sync_0184

0.779

sync_0185

0.776

sync_0186

0.718

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
neuA-2	sync_0173	sync_0182	sync_0173	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Pilin glycosylation protein PglB NMB1820.	0.575
neuA-2	sync_0179	sync_0182	sync_0179	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	0.722
neuA-2	sync_0181	sync_0182	sync_0181	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.	0.960
neuA-2	sync_0183	sync_0182	sync_0183	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.	0.781
neuA-2	sync_0184	sync_0182	sync_0184	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Hypothetical protein; Identified by Glimmer2; putative.	0.780
neuA-2	sync_0185	sync_0182	sync_0185	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Conserved hypothetical protein.	0.905
neuA-2	sync_0186	sync_0182	sync_0186	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	Hypothetical protein; Identified by Glimmer2; putative.	0.718
rffM	sync_0150	sync_0282	sync_0150	Glycosyl transferase WecB/TagA/CpsF family protein; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.	Identified by match to protein family HMM PF02706.	0.498
rffM	sync_0183	sync_0282	sync_0183	Glycosyl transferase WecB/TagA/CpsF family protein; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.	Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.	0.819
sync_0150	rffM	sync_0150	sync_0282	Identified by match to protein family HMM PF02706.	Glycosyl transferase WecB/TagA/CpsF family protein; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.	0.498
sync_0150	sync_0160	sync_0150	sync_0160	Identified by match to protein family HMM PF02706.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.806
sync_0150	sync_0179	sync_0150	sync_0179	Identified by match to protein family HMM PF02706.	Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	0.531
sync_0150	sync_0181	sync_0150	sync_0181	Identified by match to protein family HMM PF02706.	Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.	0.464
sync_0150	sync_0183	sync_0150	sync_0183	Identified by match to protein family HMM PF02706.	Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.	0.947
sync_0160	sync_0150	sync_0160	sync_0150	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Identified by match to protein family HMM PF02706.	0.806
sync_0160	sync_0179	sync_0160	sync_0179	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	0.516
sync_0160	sync_0183	sync_0160	sync_0183	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.	0.829
sync_0173	neuA-2	sync_0173	sync_0182	Pilin glycosylation protein PglB NMB1820.	Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.	0.575
sync_0173	sync_0179	sync_0173	sync_0179	Pilin glycosylation protein PglB NMB1820.	Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.	0.841
sync_0173	sync_0181	sync_0173	sync_0181	Pilin glycosylation protein PglB NMB1820.	Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.	0.563