STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0186Hypothetical protein; Identified by Glimmer2; putative. (710 aa)    
Predicted Functional Partners:
sync_0187
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
       0.773
sync_0185
Conserved hypothetical protein.
       0.722
sync_0181
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
       0.718
neuA-2
Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.
       0.718
sync_0183
Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.
       0.718
sync_0184
Hypothetical protein; Identified by Glimmer2; putative.
       0.718
sync_0180
Hypothetical protein; Identified by Glimmer2; putative.
       0.598
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
       0.555
sync_0179
Identified by match to protein family HMM PF00571; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
       0.549
sync_0176
Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.430
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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