STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0187Short chain dehydrogenase; Identified by match to protein family HMM PF00106. (267 aa)    
Predicted Functional Partners:
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.957
sync_0185
Conserved hypothetical protein.
 
   
 0.800
sync_2857
Short-chain dehydrogenase/reductase family enzyme; Identified by match to protein family HMM PF00106.
  
 
 
 0.776
sync_0186
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
neuA-2
Posttranslational flagellin modification protein B; Identified by match to protein family HMM PF02348.
 
 
   0.769
bdh
Short-chain dehydrogenase/reductase family enzyme; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.769
sync_0181
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
     0.752
sync_1244
Oxidoreductase, short-chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.744
sync_0184
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.720
sync_0183
Undecaprenyl-phosphate glucosephosphotransferase; Identified by match to protein family HMM PF02397.
       0.718
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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