sync_0210 protein (Synechococcus sp. CC9311)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sync_0210

Glycolate oxidase chain; Identified by match to protein family HMM PF01565. (405 aa)

Predicted Functional Partners:

sync_0213

0.982

sync_2057

0.947

eda

0.907

gph

0.903

sync_1566

0.902

sync_0741

0.729

sync_0156

0.653

sync_0211

0.576

sync_0387

0.486

Your Current Organism:

Synechococcus sp. CC9311

NCBI taxonomy Id: 64471
Other names: S. sp. CC9311

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
eda	sync_0156	sync_0356	sync_0156	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.448
eda	sync_0210	sync_0356	sync_0210	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	0.907
eda	sync_0213	sync_0356	sync_0213	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.904
eda	sync_1566	sync_0356	sync_1566	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	Serine:pyruvate/alanine:glyoxylate aminotransferase; Identified by match to protein family HMM PF00266; spt, agt.	0.900
eda	sync_2057	sync_0356	sync_2057	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	Glycolate oxidase subunit; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.907
gph	sync_0210	sync_0530	sync_0210	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	0.903
gph	sync_0213	sync_0530	sync_0213	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.904
gph	sync_2057	sync_0530	sync_2057	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	Glycolate oxidase subunit; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.903
sync_0156	eda	sync_0156	sync_0356	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	0.448
sync_0156	sync_0210	sync_0156	sync_0210	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	0.653
sync_0156	sync_0213	sync_0156	sync_0213	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.523
sync_0156	sync_0387	sync_0156	sync_0387	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.671
sync_0156	sync_0741	sync_0156	sync_0741	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	FAD linked oxidase, N-terminal; Identified by match to protein family HMM PF01565.	0.653
sync_0156	sync_1566	sync_0156	sync_1566	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Serine:pyruvate/alanine:glyoxylate aminotransferase; Identified by match to protein family HMM PF00266; spt, agt.	0.568
sync_0156	sync_2057	sync_0156	sync_2057	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Glycolate oxidase subunit; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.	0.653
sync_0210	eda	sync_0210	sync_0356	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.	0.907
sync_0210	gph	sync_0210	sync_0530	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.	0.903
sync_0210	sync_0156	sync_0210	sync_0156	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.653
sync_0210	sync_0211	sync_0210	sync_0211	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	Conserved hypothetical protein.	0.576
sync_0210	sync_0213	sync_0210	sync_0213	Glycolate oxidase chain; Identified by match to protein family HMM PF01565.	Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.	0.982