STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0210Glycolate oxidase chain; Identified by match to protein family HMM PF01565. (405 aa)    
Predicted Functional Partners:
sync_0213
Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
 
 
 0.981
sync_2057
Glycolate oxidase subunit; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913.
 
  
 
0.947
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P50846; match to protein family HMM PF01081.
   
 
 0.907
gph
Haloacid dehalogenase/epoxide hydrolase family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
    
 0.905
sync_1566
Serine:pyruvate/alanine:glyoxylate aminotransferase; Identified by match to protein family HMM PF00266; spt, agt.
  
 
 0.903
sync_0741
FAD linked oxidase, N-terminal; Identified by match to protein family HMM PF01565.
  
     0.729
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
 
 0.716
sync_0387
Ferredoxin-dependent glutamate synthase, Fd-GOGAT; Identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.655
sync_0211
Conserved hypothetical protein.
       0.565
sync_0154
Membrane protein, putative.
   
 
 0.435
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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