Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sync_0212Identified by match to protein family HMM PF00903. (179 aa)    
Predicted Functional Partners:
sync_0213
Fe-S oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
       0.773
icd
Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183.
       0.773
sync_0215
Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.
       0.545
sync_2412
Dienelactone hydrolase.
  
     0.431
sync_0887
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.424
sync_0216
Heme oxygenase; Identified by match to protein family HMM PF01126.
       0.411
sync_0217
Conserved hypothetical protein.
       0.411
sync_0156
Polyketide synthase, putative; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746.
  
  
 0.407
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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