STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sync_0217Conserved hypothetical protein. (360 aa)    
Predicted Functional Partners:
sync_0216
Heme oxygenase; Identified by match to protein family HMM PF01126.
   
   0.817
sync_0215
Conserved hypothetical protein; Identified by similarity to GB:AAQ00795.1.
 
     0.747
psbX
Photosystem II reaction centre X protein (PsbX); Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.
  
     0.731
sync_1352
Uncharacterized protein.
  
     0.711
sync_0118
Conserved hypothetical protein.
  
     0.689
sync_0218
Hypothetical protein; Identified by Glimmer2; putative.
       0.671
sync_0345
Uncharacterized secreted or membrane protein.
  
     0.649
sync_0478
Conserved hypothetical protein.
  
     0.649
sync_1205
Conserved hypothetical protein.
  
     0.606
sync_1909
Uncharacterized ycii family conserved protein; Identified by match to protein family HMM PF03795.
  
     0.605
Your Current Organism:
Synechococcus sp. CC9311
NCBI taxonomy Id: 64471
Other names: S. sp. CC9311
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.